Cadre de recherche C1ifremer

Tél : +(689) 40 546 092
E-mail : jeremy.le.luyer@ifremer.fr

Adresse :
BP 49
98719 Taravao

Thématique(s) de Recherche  :

Génomique fonctionnelle et populationnelle, physiologie, évolution, aquaculture

Publications :

Le Luyer J., Milhade L., Reisser C., Soyez C., Monaco C. J., Belliard C., Le Moullac G., Ky C.-L., Pernet F. Gene expression plasticity, genetic variation and fatty acid remodelling in divergent populations of a tropical bivalve species. Journal of Animal Ecology, In press

Caizergues A. E., Le Luyer J., Grégoire A., Szulkin M., Senar J.‐C., Charmantier A., Perrier C. 2022. Epigenetics and the city: non‐parallel DNA methylation modifications across pairs of urban‐rural Great tit populations. Evolutionary Applications, 15(1), 149-165

Leitwein M., Wellband K., Cayuela H., Le Luyer J., Mohns K., Withler R., Bernatchez L. 2022. Strong parallel differential gene expression induced by hatchery rearing weakly associated with methylation signals in adult Coho Salmon (O. kisutch). Genome Biology and Evolution, In press

Lutier M., Di Poi C., Gazeau F., Appolis A., Le Luyer J., Pernet F. 2022. Revisiting tolerance to ocean acidification: insights from a new framework combining physiological and molecular tipping points of Pacific oyster. Global Change Biology, In press

Leitwein M., Laporte M., Le Luyer J., Mohns K., Normandeau E., Withler R., Bernatchez L. 2021. Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration. Evolutionary Applications, 14(10), 2402-2413

Gardon T., El Rakwe M., Paul-Pont I., Le Luyer J., Thomas L., Prado E., Boukerma K., Cassone A.-L., Quillien V., Soyez C., Costes L., Crusot M., Dreanno C., Le Moullac G., Huvet A. 2021. Microplastics contamination in pearl-farming lagoons of French Polynesia. Journal Of Hazardous Materials, 419, 126396 (13p.)

Le Luyer J., Schull Q., Auffret P., Lopez P., Crusot M., Belliard C., Basset C., Carradec Q., Poulain J., Planes S., Saulnier D. 2021. Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection. Animal Microbiome, 3(1), 35 (15p.)

Christensen K. A., Le Luyer J., Chan M. T. T., Rondeau E. B., Koop B. F., Bernatchez L., Devlin R. H. 2021. Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon. G3-genes Genomes Genetics, 11(2), jkab021 (11p.)

Gardon T., Morvan L., Huvet A., Quillien V., Soyez C., Le Moullac G., Le Luyer J. 2020. Microplastics induce dose-specific transcriptomic disruptions in energy metabolism and immunity of the pearl oyster Pinctada margaritifera. Environmental Pollution, 266(Part 3), 115180 (9p.)

Auffret P., Le Luyer J., Sham Koua M., Quillien V., Ky C.-L. 2020. Tracing key genes associated with the Pinctada margaritifera albino phenotype from juvenile to cultured pearl harvest stages using multiple whole transcriptome sequencing. Bmc Genomics, 21(1), 662 (13p.)

Smith S. R., Amish S. J., Bernatchez Louis, Le Luyer J., Wilson C., Boeberitz O., Luikart G., Scribner K. T. 2020. Mapping of Adaptive Traits Enabled by a High-Density Linkage Map for Lake Trout. G3-genes Genomes Genetics, 10(6), 1929-1947

Grunau C., Le Luyer J., Laporte M., Joly D. 2020. The Epigenetics Dilemma. Genes, 11(1), 23 (3p.)

Fuller J., Ferchaud A.-L., Laporte M., Le Luyer J., Davis T. B., Côté S. D., Bernatchez L. 2020. Absence of founder effect and evidence for adaptive divergence in a recently introduced insular population of white‐tailed deer (Odocoileus virginianus). Molecular Ecology, 29(1), 86-104

Alves Monteiro H., Brahmi C., Lapeyre B., Mayfield A. B., Le Luyer J.2020. Molecular mechanisms underlying acclimation to elevated temperatures over long-term timescales in a marine symbiosis. Global Change Biology, 26(3), 1271-1284

Laporte M. *, Le Luyer J. *, Rougeux C., Dion-Côté A.-M., Krick M., Bernatchez L. 2019. DNA methylation reprogramming, TE derepression and postzygotic isolation of nascent animal species. Science Advances, 5(10), eaaw1644 (9p.). *co-first authors

Rougemont Q., Carrier A., Le Luyer J., Ferchaud A.-L., Farrell J. M., Hatin D., Brodeur P., Bernatchez L. 2019. Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin. Evolutionary Applications, 12(5), 902-922

Wellenreuther M.*, Le Luyer J.* Cook D., Ritchie P. A., Bernatchez L. 2019. Domestication and temperature modulate gene expression signatures and growth in the Australasian snapper Chrysophrys auratus. G3-genes Genomes Genetics, 9(1), 105-116  *co-first authors

Le Luyer J., Auffret P., Quillien V., Leclerc N., Reisser C., Vidal-Dupiol J., Ky C.-L. 2019. Whole transcriptome sequencing and biomineralization gene architecture associated with cultured pearl quality traits in the pearl oyster, Pinctada margaritifera. BMC Genomics, 20, 111 (2019).

Létourneau J, Ferchaud A-L, Le Luyer J, Laporte M, Garant D, Bernatchez L. 2018. Predicting the genetic impact of stocking in Brook Charr (Salvelinus fontinalis) by combining RAD sequencing and modeling of explanatory variables. Evolutionnary Applications, 11(5), 577-592

Le Luyer J., Laporte M., Beacham T. D., Kaukinen K. H., Withler R. E., Koop B. F., Leong S. J., Rondeau É., Bernatchez L. 2017. Parallel epigenetic modifications induced by hatchery rearing in Pacific Salmon. Proceedings of the National Academy of Sciences, 114(49), 12964-12969

Moore J.-S., Harris L., Le Luyer J., Sutherland B., Rougemont Q., Tallman R., Fisk A., Bernatchez L. 2017.  Migration harshness drives habitat choice and local adaptation in anadromous Arctic Char: evidence from integrating population genomics and acoustic telemetry. Molecular Ecology, 26(24), 6784-6800

Ulmo-Díaz G., Hurtado A., Le Luyer J., Erik García-Machado E., Bernatchez L. 2017. The complete mitochondrial DNA of the Cuban gar (Atractosteus tristoechus). Mitochondrial DNA part B: ressources, 2(1), 359-360.

Benestan L., Moore, J.-S., Sutherland B. J. G., Le Luyer J., Maaroufi H., Rougeux C., Normandeau E., Rycroft N., Atema J., Harris L. N., Tallman R. F., Greenwood S. J., Clark F. K., Bernatchez L. 2017. Sex matters in massive parallel sequencing: evidence for biases in genetic parameter and investigation of sex determination systems. Molecular Ecology. 26: 6767– 6783. From the cover

Le Luyer J., Deschamps M.-H., Proulx É., Poirier Stewart N., Droit A., Sire J.-Y., Robert C., Vandenberg G. W. RNA-seq transcriptome analysis of pronounced biconcave vertebrae: a common abnormality in rainbow trout (Oncorhynchus mykiss, Walbaum) fed a low-phosphorus diet. 2015. Journal of Next Generation Sequencing and Applications. Biomedical Sci 15-116.

Le Luyer J., Deschamps M.-H., Proulx É., Poirier Stewart N., Joly Beauparlant C., Droit A., Robert C. Vandenberg G. W. 2014. Establishment of a comprehensive reference transcriptome for vertebral bone tissue to study the impacts of nutritional phosphorus deficiency in rainbow trout (Oncorhynchus mykiss, Walbaum). Marine Genomics, 18PB:141-144

Le Luyer J., Deschamps M.-H., Proulx É., Poirier Stewart N., Robert C., Vandenberg G. W. 2014. Responses of different body compartments to acute dietary phosphorus deficiency in juvenile triploid rainbow trout (Oncorhynchus mykiss, Walbaum). Journal of Applied Ichthyology, 30(4).

Poirier Stewart N., Deschamps M.-H., Witten P. E., Le Luyer J., Proulx É., Huysseune A., Bureau D. P., Vandenberg G. W. 2014. X-ray-based morphometrics: an approach to diagnose vertebral abnormalities in under-mineralized vertebrae of juvenile triploid all-female rainbow trout (Oncorhynchus mykiss) fed with a phosphorus deficient diet. Journal of Applied Ichthyology, 30(4).

Liens :


Projets Scientifiques:

RoriAqua2 (2022-2024) Resp. WP

Support au développement de la filière holoturie en Polynésie

Quanapa (2020-2025) Resp. WP

Amélioration de la qualité de la perle et développement de ressources génomique chez P. margaritifera

Genomax (2020-2022)

Assemblage et annotation du génome de Pinctada maxima

Revealing (2021-2022) P.I.

Ecosystems resilience and vulnerability in face of climate change

PinctAdapt (2019 – 2024) P.I.

Pearl stock and farming in a changing world

AiAiAi (2018 – 2021)

Acidification, acclimatation et adaptation des mollusques bivalves

CIBI (2018 – 2020)

CrispR-cas9 : preuve de concept sur bivalves

Capamax (2018 – 2020) P.I.

Meta-transcriptome du système hôte-microbiote chez le platax

Acclimabest (2017-2018) P.I.

Acclimatation du bénitier et de ses symbionts au réchauffement

Gamma (2017-2018) P.I.

Acclimatation et adaptation des populations de P. margaritifera des Gambier et des Marquises au réchauffement